Eric Banks 2e36dd9001 Refactoring of CombineGVCFs to make it run a lot faster. ... Creating new VariantContexts each time we broke up a block was very expensive because we break up blocks so often. Also, calling into GATKVariantContextUtils.simpleMerge was really hurting performance. MD5 changes because we no longer propogate any INFO fields (except for END) for reference blocks; the tests have the now unused BLOCK_SIZE field that now get dropped.		2014-02-11 03:18:52 -05:00
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gatk-protected	Refactoring of CombineGVCFs to make it run a lot faster.	2014-02-11 03:18:52 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00