hanna 165e504d1c Turn on new TraverseLociByReference is now only dependent on the -et flag. REGION_STR does not matter. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@454 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-16 19:45:47 +00:00
..
gatk	Turn on new TraverseLociByReference is now only dependent on the -et flag. REGION_STR does not matter.	2009-04-16 19:45:47 +00:00
playground	chnage class name, now it compiles...	2009-04-16 16:51:00 +00:00
utils	Changed interface from contig,pos,length to more common contig,start,stop interface.	2009-04-16 00:04:41 +00:00
StingException.java	We need a base exception so we can differentiate between exceptions we've generated and those external to our code. All our exceptions should extend this exception. I'll migrate the ones I can find later on.	2009-04-07 00:13:45 +00:00