gatk3的最后一个经典版本3.8

hanna 165e504d1c Turn on new TraverseLociByReference is now only dependent on the -et flag. REGION_STR does not matter. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@454 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-16 19:45:47 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated with last week / next week for 6 April.	2009-04-06 14:05:20 +00:00
java	Turn on new TraverseLociByReference is now only dependent on the -et flag. REGION_STR does not matter.	2009-04-16 19:45:47 +00:00
python	Fixed potential bug with next() operation returning empty contexts when a read contains a large deletion. We can now use the look ahead safely...	2009-04-15 21:41:30 +00:00
settings	Latest version of sam.	2009-04-15 21:02:25 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	better description	2009-04-15 22:06:36 +00:00
build.xml	Added the base test case, fixed the rest of the test cases to follow suit. Added more verbose output to ant for junit tests.	2009-04-14 17:11:38 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00