Eric Banks 165b936fcd Fixing the 'header is negative' problem in Reduce Reads... again. ... Previous fixes and tests only covered trailing soft-clips. Now that up front hard-clipping is working properly though, we were failing on those in the tool. Added a patch for this as well as a separate test independent of the soft-clips to make sure that it's working properly.		2013-06-24 14:06:21 -04:00
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java	Fixing the 'header is negative' problem in Reduce Reads... again.	2013-06-24 14:06:21 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00