gatk3的最后一个经典版本3.8

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Eric Banks 165b936fcd Fixing the 'header is negative' problem in Reduce Reads... again. Previous fixes and tests only covered trailing soft-clips. Now that up front hard-clipping is working properly though, we were failing on those in the tool. Added a patch for this as well as a separate test independent of the soft-clips to make sure that it's working properly.		2013-06-24 14:06:21 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Fixing the 'header is negative' problem in Reduce Reads... again.	2013-06-24 14:06:21 -04:00
public	Fixing the 'header is negative' problem in Reduce Reads... again.	2013-06-24 14:06:21 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit