hanna 15c14add4d Repackage the aligner for better partitioning. The C aligner, for example, is now ... partitioned from the Java aligner, and both are partitioned from the more general- purpose BWT reader. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-13 22:55:27 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00
test/org/broadinstitute/sting	1. Bug fix: check that AF=0 doesn't contain more probability than 1-fraction	2009-11-13 18:02:18 +00:00