hanna 15c14add4d Repackage the aligner for better partitioning. The C aligner, for example, is now ... partitioned from the Java aligner, and both are partitioned from the more general- purpose BWT reader. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-13 22:55:27 +00:00
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Makefile	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00
build_linux.sh	More preparation for bwa patch: create a crude, minimal build system to build	2009-11-06 18:41:01 +00:00
build_mac.sh	BWA/C changes have arrived in svn repository. Remove temporary storage from Sting repository.	2009-11-11 16:48:21 +00:00
bwa_gateway.cpp	Fix max edit distance to ensure interface similarity between our aligner and	2009-11-13 22:18:56 +00:00
bwa_gateway.h	Fix max edit distance to ensure interface similarity between our aligner and	2009-11-13 22:18:56 +00:00
org_broadinstitute_sting_alignment_bwa_c_BWACAligner.cpp	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00
org_broadinstitute_sting_alignment_bwa_c_BWACAligner.h	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00