hanna 15c14add4d Repackage the aligner for better partitioning. The C aligner, for example, is now ... partitioned from the Java aligner, and both are partitioned from the more general- purpose BWT reader. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-13 22:55:27 +00:00
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bwa	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00
SeparateQltout.cc	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00