gatk3的最后一个经典版本3.8

Eric Banks 15b8c08132 Apparently CIGAR elements can have 0 length according to the spec, but 0Ms were causing left alignment of indels to fail. Fixed.		2012-11-06 20:53:33 -08:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Moving UG integration tests to protected since they use protected-only contamination filtering. Adding a new UGLite integration test to confirm that contamination filtering is ignored in lite.	2012-10-31 21:28:07 -04:00
public	Apparently CIGAR elements can have 0 length according to the spec, but 0Ms were causing left alignment of indels to fail. Fixed.	2012-11-06 20:53:33 -08:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-10-10 13:26:13 -04:00
build.xml	Refuse to package the GATK from a non-clean working directory	2012-11-02 19:11:24 -04:00
intellij_example.tar.bz2	Adding intellij example files to the repo	2012-10-15 13:49:09 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00