hanna 14e19f4605 (Slightly) better exception text when SAM/BAM output file can't be created. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4392 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-30 18:43:22 +00:00
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alignment	Final step in error refactoring. GATK exception is now ReviewedStingException, indicating that this exception is really what one wants. Only use this exception when you have thought about StingException vs. UserException and made a real decision.	2010-09-12 15:07:38 +00:00
analyzecovariates	All exceptions thrown by the GATK have been reviewed and UserErrors replaced where appropriate. Shazam. Another check-in will remove the GATKException and restore the StingException.	2010-09-10 15:25:30 +00:00
commandline	Every Sting app from now on will be forced into the US English locale.	2010-09-29 21:55:21 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	(Slightly) better exception text when SAM/BAM output file can't be created.	2010-09-30 18:43:22 +00:00
oneoffprojects	Recent changes to the build system make the build system complain loudly about	2010-09-24 22:09:12 +00:00
playground	Fix for G: make sure to generate the genotype conformations in the grid for the target frequency when not using grid search for anything except the conformations	2010-09-29 16:44:53 +00:00
queue	For enums generate the full path to the Enum type to avoid collisions such as enum Model and enum Model used in the same class.	2010-09-29 05:28:59 +00:00
utils	Moved phasing classes out of playground! The code is still under production, though...	2010-09-28 23:21:28 +00:00