Mark DePristo 14d8afe413 Remove startSearchAt state variable from ActivityProfile ... -- New algorithm will only try to create an active region if there's at least maxREgionSize + propagation distance states in the list. When that's true, we are guaranteed to actually find a region. So this algorithm is not only truly correct but as super fast, as we only ever do the search for the end of the region when we will certainly find one, and actually generate a region.		2013-01-27 14:10:08 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Remove startSearchAt state variable from ActivityProfile	2013-01-27 14:10:08 -05:00
test	Added realistic BandPassFilterUnitTest that ensures quality results for 1000G phase I VCF and NA12878 VCF	2013-01-27 14:10:08 -05:00