ebanks 14bf6923a8 HapMap-to-VCF now works fine within Variants-to-VCF. Added integration test for it and removed old code. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3077 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-26 18:34:59 +00:00
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alignment	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00
analyzecovariates	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer.	2010-03-16 19:45:02 +00:00
gatk	HapMap-to-VCF now works fine within Variants-to-VCF. Added integration test for it and removed old code.	2010-03-26 18:34:59 +00:00
oneoffprojects	bug caused by a misprint: context != contexts	2010-03-25 03:08:24 +00:00
playground	HapMap-to-VCF now works fine within Variants-to-VCF. Added integration test for it and removed old code.	2010-03-26 18:34:59 +00:00
utils	Rods for reads hooked up into the cleaner	2010-03-24 18:17:56 +00:00