hanna 14477bb48e Unidirectional alignments with mismatches now working. Significant refactoring will be required. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1686 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-22 19:05:10 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Unidirectional alignments with mismatches now working. Significant refactoring will be required.	2009-09-22 19:05:10 +00:00
test/org/broadinstitute/sting	fixed a bug I checked in that Eric found, for intervals with no start or stop coordinate. Now I owe Eric a cookie, and Milk Street is so far away. Damn.	2009-09-22 04:34:18 +00:00