2. Added a shell for the indel cleaner walker (it's currently being used to test the interval traversal). 3. Fixed small bug in downsampling (make sure to downsample the offsets too) 4. GenomeAnalysisTK.execute => anyone object to my change to "instanceof" instead of trying to catch a ClassCastException (yuck)? git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@524 348d0f76-0448-11de-a6fe-93d51630548a |
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| src/org/broadinstitute/sting | ||
| test/org/broadinstitute/sting | ||