zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public
History
Laura Gauthier 3dc68732fb Little changes to M2 code and docs 
Make MQ threshold a parameter (compare to M1 by setting to zero)
Add logic for multiple alternate alleles in tumor
Exclude MQ0 normal reads from normal LOD calculation
Fix path errors in Dream_Evaluations.md
Move M2 eval scripts out of walkers package so they run
 		2015-08-27 15:31:27 -04:00
..
VectorPairHMM Updated licenses for 2015 2015-08-06 15:23:11 -04:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Updated readme in public/doc to just point to the website 2015-03-12 11:52:48 -04:00
external-example Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-engine Adding Static Binning to BQSR 2015-08-24 13:36:17 -04:00
gatk-queue Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-queue-extensions-generator Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-queue-extensions-public Adding CollectWgsMetrics wrapper for queue 2015-08-14 10:18:12 -04:00
gatk-root Move htsjdk & picard to rev 1.138 2015-08-20 10:42:25 -04:00
gatk-tools-public Make GenotypeGVCFs subset Strand Allele Counts intelligently 2015-08-22 08:33:09 -04:00
gatk-utils Little changes to M2 code and docs 2015-08-27 15:31:27 -04:00
gsalib Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
repo Updated gatk so it compiles on java 8 2015-06-26 15:59:46 -04:00
src/main Added faster built executable, non-packaged jars. 2014-11-05 00:30:46 +08:00
pom.xml Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00