David Roazen f3c94a3c87 Update expected test output for Java 7 ... -Changes in Java 7 related to comparators / sorting produce a large number of innocuous differences in our test output. Updating expectations now that we've moved to using Java 7 internally. -Also incorporate Eric's fix to the GATKSAMRecordUnitTest to prevent intermittent failures.		2013-05-01 16:18:01 -04:00
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CNV	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
coverage	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
qc	Fix runtime public -> protected dependencies in the test suite	2013-02-26 21:19:12 -05:00
readutils	Several improvements to ReadAdaptorTrimmer so that it can be incorporated into ancient DNA processing pipelines (for which it was developed):	2013-04-13 13:41:36 -04:00
variantutils	Fixed bug in SelectVariants where maxIndelSize argument wasn't getting applied to deletions.	2013-03-13 15:11:34 -04:00
BAQIntegrationTest.java	Update MD5s to reflect version number change in the BAM header	2013-02-01 13:51:31 -05:00