David Roazen f3c94a3c87 Update expected test output for Java 7 ... -Changes in Java 7 related to comparators / sorting produce a large number of innocuous differences in our test output. Updating expectations now that we've moved to using Java 7 internally. -Also incorporate Eric's fix to the GATKSAMRecordUnitTest to prevent intermittent failures.		2013-05-01 16:18:01 -04:00
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datasources	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
downsampling	Setting the reduce reads count tag was all wrong in a previous commit; fixing.	2013-04-30 13:45:42 -04:00
executive	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
filters	Added check in the MalformedReadFilter for reads without stored bases (i.e. that use '*').	2013-03-14 17:17:26 -04:00
iterators	Refactor LIBS into utils.locusiterator before refactoring	2013-01-11 15:17:16 -05:00
refdata	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
report	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
samples	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
traversals	Make ActiveRegionTraversal robust to excessive coverage	2013-04-08 15:48:19 -04:00
walkers	Update expected test output for Java 7	2013-05-01 16:18:01 -04:00
CommandLineGATKUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
EngineFeaturesIntegrationTest.java	Further tweaking of test timeouts	2013-03-15 14:49:21 -04:00
GenomeAnalysisEngineUnitTest.java	Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.	2013-03-06 12:38:59 -05:00
MaxRuntimeIntegrationTest.java	Bump timeout for MaxRuntimeIntegrationTest	2013-03-17 16:17:29 -04:00
WalkerManagerUnitTest.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00