gatk-3.8/public
Mark DePristo 13211231c7 Restructure and cleanup ExactAFCalculations
-- Now there's no duplication between exact old and constrained models.  The behavior is controlled by an overloaded abstract function
-- No more static function to access the linear exact model -- you have to create the surrounding class.  Updated code in the system
-- Everything passes unit tests
2012-10-15 07:53:54 -04:00
..
R Fix a nasty bug in reading GATK reports with a single line 2012-09-10 20:14:13 -04:00
c
chainFiles
doc
java Restructure and cleanup ExactAFCalculations 2012-10-15 07:53:54 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release. 2012-07-23 16:32:31 -04:00
perl Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters) 2012-06-07 16:56:32 -04:00
scala RetryMemoryLimit now works with Scatter/Gather. 2012-10-09 21:51:03 -04:00
testdata Reverting move of BQSR tests to public, as per DR's email 2012-07-19 10:02:05 -04:00