gatk3的最后一个经典版本3.8

Eric Banks 12fc198b80 Added better error message for BAMs with bad read groups. ... * Split the cases into reads that don't have a RG at all vs. those with a RG that's not defined in the header. * Added integration tests to make sure that the correct error is thrown. * Resolved GSA-407.		2013-02-27 16:02:56 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Update docs for RTC.	2013-02-27 14:56:44 -05:00
public	Added better error message for BAMs with bad read groups.	2013-02-27 16:02:56 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00