gatk3的最后一个经典版本3.8

Guillermo del Angel 1248f9025d Clean up and fix bug in PoolGenotypeLikelihoodsUnitTest. b) Cosmetic fixes to PoolAFCalculationModel, don't print PL vectors per pool if they're too long or else vcf's are too hard to make sense of		2012-04-03 21:27:53 -04:00
public	Fix up broken non-pool UG tests: GenotypeLikelihoods.calcNumLikelihoods now expects total # of alleles, not # of alt ones. Add doc to new function implementation. Add unit test for function. Add unit test for PoolGenotypeLikelihoods (not fully done yet)	2012-04-03 20:51:24 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	Updated license year	2012-03-27 14:32:02 -04:00
build.xml	Bug fix to previous UnifiedGenotyperEngine refactoring, removed debug code	2012-03-25 10:20:21 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00