gatk3的最后一个经典版本3.8

Mark DePristo 1200848bbf Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers ... -- Deleted ReadMetaDataTracker -- Added function to ReadShard to give us the span from the left most position of the reads in the shard to the right most, which is needed for the new view		2012-08-30 10:15:10 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
public	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00