ebanks 11ac7885b0 Pull out StratifiedAlignmentContext code so other walkers can use it. ... This is basically a wrapper class around AlignmentContext which allows you to stratify a context by e.g. reads on forward vs. reverse strands. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2312 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-10 19:21:16 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Pull out StratifiedAlignmentContext code so other walkers can use it.	2009-12-10 19:21:16 +00:00
test/org/broadinstitute/sting	Forgot to update integration test last night	2009-12-10 12:57:10 +00:00