David Roazen 118e974731 GATK Engine: special-case "monolithic" FilePointers, and allow them to represent multiple contigs ... Sometimes the GATK engine creates a single monolithic FilePointer representing all regions in all BAM files. In such cases, the monolithic FilePointer is the only FilePointer emitted by the BAMScheduler, and it's safe to allow it to contain regions and intervals from multiple contigs. This fixes support for reading unindexed BAM files (since an unindexed BAM is one case in which the engine creates a monolithic FilePointer).		2012-10-02 15:30:03 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	GATK Engine: special-case "monolithic" FilePointers, and allow them to represent multiple contigs	2012-10-02 15:30:03 -04:00
test	Merged bug fix from Stable into Unstable	2012-09-29 00:57:43 -04:00