gatk3的最后一个经典版本3.8

David Roazen 118e974731 GATK Engine: special-case "monolithic" FilePointers, and allow them to represent multiple contigs ... Sometimes the GATK engine creates a single monolithic FilePointer representing all regions in all BAM files. In such cases, the monolithic FilePointer is the only FilePointer emitted by the BAMScheduler, and it's safe to allow it to contain regions and intervals from multiple contigs. This fixes support for reading unindexed BAM files (since an unindexed BAM is one case in which the engine creates a monolithic FilePointer).		2012-10-02 15:30:03 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Added an argument to RR to allow polyploid consensus creation (by default it is turned off). This will eventually be replaced by the known SNPs track trigger.	2012-09-28 11:44:25 -04:00
public	GATK Engine: special-case "monolithic" FilePointers, and allow them to represent multiple contigs	2012-10-02 15:30:03 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00