gatk3的最后一个经典版本3.8

Guillermo del Angel 118da1cd1c More test data for fastq-bam: new short.interval_list with correct header based on reference dict. ... b) New interval/bait sets with corrected header for decoy contig in b37 c) New metadata file for test fastqs d) Updated test fastqs as previous version was generated with bad intervals		2012-10-23 09:24:09 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Refactored the compression interface per sample in ReduceReadsa	2012-10-17 16:40:40 -04:00
public	a) Resolve [#DEV-56] - test data with indels in new directory private/testdata/CMITestData/. b) Skeleton (not yet working) of fastq-BAM unit test, c) misc bug fixes for QC functions to work (not done yet)	2012-10-22 19:59:15 -04:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00