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gatk-3.8/java/src/org/broadinstitute/sting/oneoffprojects/walkers
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hanna c1e53d407d The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 
unicode quote characters embedded in it.  These characters were invisible inside
IntelliJ but cause compile warnings for Ryan and Aaron, who for whatever reason
have a different default charset.  Fixed.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3203 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-04-20 15:26:32 +00:00
..
annotator The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
varianteval/multisample The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
vcftools The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
AlignedReadsHistoWalker.java adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come. 2010-03-03 15:56:44 +00:00
AlleleBalanceHistogramWalker.java the last-mile commit for Tribble integration. The system is now ready for Tribble to be turned on, as soon as we've removed any dependencies in the ROD code on interfaces that aren't in the Tribble library (i.e. the Variation or Genotype interface on RODs). All of the walkers should be up to date. 2010-03-31 22:39:56 +00:00
BaseTransitionTableCalculatorJavaWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
DSBWalkerV3.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
IOCrusherWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
IndelErrorRateWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
MismatchCounterWalker.java adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come. 2010-03-03 15:56:44 +00:00
MismatchHistoWalker.java adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come. 2010-03-03 15:56:44 +00:00
NeighborhoodQualityWalker.java Yet more walkers moved to oneoffprojects. 2009-12-01 21:29:12 +00:00
PairedQualityScoreCountsWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
QualityScoreByStrandWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ReadErrorRateWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ReadQualityScoreWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ReplaceQuals.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
TestReadFishingWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
TestVariantContextWalker.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ValidateDbSNPConversion.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00