gatk3的最后一个经典版本3.8

depristo 11377ef390 Added lots of assertions to check for problems. The current GenomeLoc needs to be cleaned up and refactored but at least it runs. We need unit tests ASAP ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@392 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-14 00:53:08 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated with last week / next week for 6 April.	2009-04-06 14:05:20 +00:00
java	Added lots of assertions to check for problems. The current GenomeLoc needs to be cleaned up and refactored but at least it runs. We need unit tests ASAP	2009-04-14 00:53:08 +00:00
python	Helper utility for merging BAM files	2009-04-09 20:10:41 +00:00
settings	Bump sam jdk to svn rev 207.	2009-04-08 22:16:46 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Added MatchSQTagToStrand jar target.	2009-04-13 00:50:36 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00