gatk3的最后一个经典版本3.8
 
 
 
 
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David Roazen 10dc038a24 Separate tests that access the knowledge base from other tests
The tests that access the knowledge base are interfering with the basic
ability to run the unit/integration test suite to completion -- these
few tests often take hours to complete.

Created a new class of test ("KnowledgeBaseTest") that runs separately
from the unit/integration test suite, with corresponding build target.
A new bamboo plan will be set up to run these tests independently so
that they don't interfere with unit/integration testing.

With this change, plus the recent changes to the parallel test runner,
unit/integration test suite runtime should be back down to ~30 minutes
on average.
2013-12-06 11:31:35 -05:00
licensing deleted old license files 2013-07-02 16:36:47 -04:00
protected Added docs for the minPruning argument in the HC 2013-12-05 11:50:56 -05:00
public Throw a GVCFIndexException when the user doesn't specify the optimal indexing strategy 2013-12-03 23:12:14 -05:00
settings Rev Picard 1.102.1595 2013-12-03 13:31:01 -05:00
.gitignore Detect stuck lock-acquisition calls, and disable file locking for tests 2013-04-24 22:49:02 -04:00
README.md Update README file for the 2.6 release 2013-06-20 13:08:29 -04:00
build.xml Separate tests that access the knowledge base from other tests 2013-12-06 11:31:35 -05:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Changing from scala 2.9.2 to 2.10.2. 2013-09-23 12:42:22 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/