aaron 107b5d73b5 The flagStatReadWalker generates the exact same statistical output as the samtools flagstat command, so the two outputs can be diff'ed. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@883 348d0f76-0448-11de-a6fe-93d51630548a		2009-06-02 21:23:56 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	The flagStatReadWalker generates the exact same statistical output as the samtools flagstat command, so the two outputs can be diff'ed.	2009-06-02 21:23:56 +00:00
test/org/broadinstitute/sting	added some more documentation to the GLF writer and it's supporting classes, and some other fixes	2009-06-02 14:53:58 +00:00