gatk-3.8/java
depristo 10466dc7d1 I finally broke down and added a default documentation string to @Input for use in Queue scripts. It's not ideal, but I couldn't take any more queue scripts with doc="x" all over the place.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5461 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-17 18:05:25 +00:00
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config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src I finally broke down and added a default documentation string to @Input for use in Queue scripts. It's not ideal, but I couldn't take any more queue scripts with doc="x" all over the place. 2011-03-17 18:05:25 +00:00
test Removing some debug code from VQSRv2. VariantEval can now be stratified by contig with -ST Contig. New hidden option in CombineVariants for overlapping records to take the info fields from the record with the highest AC (while still updating AC/AN/AF correctly) instead of dropping info fields which aren't exactly the same. 2011-03-15 21:28:10 +00:00