Mauricio Carneiro 102dafdcbc Validation of GATKSamRecord in read filters ... Moved the validation of the GATKSamRecord to the MalformedReadFilter with the intent to make the read filter the ultimate validation location for sam records. This way we can opt to filter out malformed reads if we know what we are doing or blow up otherwise.		2011-10-21 17:40:43 -04:00
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R	Fixing errors in queueJobReport runtime unit	2011-10-07 12:04:53 -07:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Validation of GATKSamRecord in read filters	2011-10-21 17:40:43 -04:00
packages	Enable testing of the jars produced by the packaging system.	2011-10-14 03:08:28 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	no sort order	2011-10-20 18:44:09 -04:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00