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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk/datasources
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Mauricio Carneiro e89ff063fc GATKSAMRecord refactor 
The GATK engine will now provide a GATKSAMRecord to all tools which incorporates the functionality used by the GATK to the bam file (ReadGroups, Reduced Reads, ...).

* No tools should create SAMRecord anymore, use GATKSAMRecord instead *
 		2011-11-03 15:43:26 -04:00
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providers GATKSAMRecord refactor 2011-11-03 15:43:26 -04:00
reads GATKSAMRecord refactor 2011-11-03 15:43:26 -04:00
rmd Cleanup of codec locations. No more dbSNPHelper 2011-08-18 10:02:46 -04:00