Mark DePristo 101ffc4dfd Expanded, contrastive VariantContextBenchmark ... -- Compares performance across a bunch of common operations with GATK 1.3 version of VariantContext and GATK 1.4 -- 1.3 VC and associated utilities copied wholesale into test directory under v13		2011-11-16 13:35:16 -05:00
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R	Compacting pdfs when running under R 2.13+.	2011-10-27 14:51:56 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Expanded, contrastive VariantContextBenchmark	2011-11-16 13:35:16 -05:00
packages	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Don't generate PDF unless you have -run specified	2011-11-09 14:45:40 -05:00
testdata	Testdata for IntervalStratification	2011-11-10 11:08:34 -05:00