chartl 101c27294d Comment this guy out so we build again. (Hate it when my repository goes all funky.) ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3673 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-29 21:16:33 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org	Comment this guy out so we build again. (Hate it when my repository goes all funky.)	2010-06-29 21:16:33 +00:00
test/org/broadinstitute/sting	An addition for Sendu since he can't seem to tell when his CountCovariate jobs die in the middle of writing the CSVs. We now write an EOF marker at the end of the covariates table and look for it when reading in the file in TableRecalibrationWalker. By default, we warn the user if the EOF marker isn't present, but we exception out if the user provides the --fail_with_no_eof_marker option.	2010-06-29 18:50:07 +00:00