hanna 1017a38f38 Initial refactoring of read traversal to make it easier to drop in intervalled reads traversal. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2894 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-26 15:09:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Initial refactoring of read traversal to make it easier to drop in intervalled reads traversal.	2010-02-26 15:09:09 +00:00
test/org/broadinstitute/sting	Support for no qual fields in VCF; better support for Mendelian violation calculations	2010-02-26 00:29:17 +00:00