David Roazen 91d10431d3 BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary ... This is a quick-and-dirty patch for the null pointer error Mauricio reported earlier. Later on we might want to address in a more general way the fact that we validate user intervals against the reference but not against the merged BAM header produced by the engine at runtime.		2012-03-09 15:20:16 -05:00
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broadinstitute/sting	BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary	2012-03-09 15:20:16 -05:00