gatk3的最后一个经典版本3.8

Mauricio Carneiro 0ff3343282 Addressing Eric's comments ... -- added @param docs to the new variables -- made all variables final -- switched to string builder instead of String for performance. GSATDG-83		2013-02-25 13:33:47 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Addressing Eric's comments	2013-02-25 13:33:47 -05:00
public	Merge pull request #59 from broadinstitute/mc_reving_testng_GSA-695	2013-02-22 10:39:04 -08:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00