Mark DePristo 0fcd358ace Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model ... -- Potentially a very fast implementation (it's very clean) but restricted to the biallelic case -- A starting point for future bi-allelic only optimized (logless) or generalized (bi-allelic general ploidy) implementations -- Added systematic unit tests covering this implementation, and comparing it to others -- Uncovered a nasty normalization bug in StateTracker that was capping our likelihoods at 0, even after summing up multiple likelihoods, which is just not safe to do and was causing us to lose likelihood in some cases -- Removed the restriction that a likelihood be <= 0 in StateTracker, and the protection for these cases in GeneralPloidyExactAFCalc which just wasn't right		2012-10-21 12:42:31 -04:00
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src/org/broadinstitute/sting	Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model	2012-10-21 12:42:31 -04:00
test/org/broadinstitute/sting	Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model	2012-10-21 12:42:31 -04:00