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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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Mark DePristo 0fcd358ace Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model 
-- Potentially a very fast implementation (it's very clean) but restricted to the biallelic case
-- A starting point for future bi-allelic only optimized (logless) or generalized (bi-allelic general ploidy) implementations
-- Added systematic unit tests covering this implementation, and comparing it to others
-- Uncovered a nasty normalization bug in StateTracker that was capping our likelihoods at 0, even after summing up multiple likelihoods, which is just not safe to do and was causing us to lose likelihood in some cases
-- Removed the restriction that a likelihood be <= 0 in StateTracker, and the protection for these cases in GeneralPloidyExactAFCalc which just wasn't right
 		2012-10-21 12:42:31 -04:00
licensing Final final final version of the license. 2012-07-20 18:00:02 -04:00
protected/java Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model 2012-10-21 12:42:31 -04:00
public Original EXACT model implementation lives, providing another reference (bi-allelic only) EXACT model 2012-10-21 12:42:31 -04:00
settings Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component. 2012-10-16 02:22:30 -04:00
.gitignore adding some directories to gitignore 2012-09-27 11:09:41 -04:00
build.xml Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component. 2012-10-16 02:22:30 -04:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component. 2012-10-16 02:22:30 -04:00