Eric Banks 0fb9179f76 BQSR optimization: don't clone the original quals for each read, we can just overwrite the original array		2012-06-07 19:41:03 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	BQSR optimization: don't clone the original quals for each read, we can just overwrite the original array	2012-06-07 19:41:03 -04:00
test	Refactored VariantsToTable so that 1) genotype-level fields can be specified (stabilized and supported code) and 2) the --moltenize argument could be supported to produce molten output of the data. Added tests that cover these capabilities.	2012-06-04 14:28:32 -04:00