carneiro c3f70cc5cb DPP: Updated after some tests with BWA. Still needs more testing. ... MDP: Removed ApplyVariantCut as it's no longer necessary with VQSR2. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5534 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-29 18:22:09 +00:00
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MethodsDevelopmentCallingPipeline.scala	DPP: Updated after some tests with BWA. Still needs more testing.	2011-03-29 18:22:09 +00:00
StandardVariantEvaluation.scala	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00