Mauricio Carneiro 6f2abd76df Updating the MDCP with the new indel gold standard from Ryan.		2012-01-09 15:31:18 -05:00
..
examples	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
GATKResourcesBundle.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
MethodsDevelopmentCallingPipeline.scala	Updating the MDCP with the new indel gold standard from Ryan.	2012-01-09 15:31:18 -05:00
PacbioProcessingPipeline.scala	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00