Eric Banks 0f30df0356 Stopgap procedure to rescue Fisher Strand for cases where there's lots of data. ... This commit consists of 2 main changes: 1. When the strand table gets too large, we normalize it down to values that are more reasonable. 2. We don't include a particular sample's contribution unless the total ref and alt counts are at least 2 each; this is a heuristic method for dealing only with hets. MD5s change as expected. Hopefully we'll have a more robust implementation for GATK 3.1.		2014-02-25 01:04:27 -05:00
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gatk-protected	Stopgap procedure to rescue Fisher Strand for cases where there's lots of data.	2014-02-25 01:04:27 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00