gatk3的最后一个经典版本3.8

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Eric Banks 0f30df0356 Stopgap procedure to rescue Fisher Strand for cases where there's lots of data. This commit consists of 2 main changes: 1. When the strand table gets too large, we normalize it down to values that are more reasonable. 2. We don't include a particular sample's contribution unless the total ref and alt counts are at least 2 each; this is a heuristic method for dealing only with hets. MD5s change as expected. Hopefully we'll have a more robust implementation for GATK 3.1.		2014-02-25 01:04:27 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Stopgap procedure to rescue Fisher Strand for cases where there's lots of data.	2014-02-25 01:04:27 -05:00
public	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Moved private/scala/test to private/queue-private/src/test/scala	2014-02-22 01:21:35 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/