hanna 0f3049652a Start to build BWT abstractions, so we can present a reasonable facsimile of the BWT to the user no matter how it's represented on disk. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1589 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-11 18:23:15 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Start to build BWT abstractions, so we can present a reasonable facsimile of the BWT to the user no matter how it's represented on disk.	2009-09-11 18:23:15 +00:00
test/org/broadinstitute/sting	So, the VCF spec allows for an optional meta field in the header representing the date. However, using this field means that integration tests run on the vcf file will fail the MD5 test (which is what happened to the VariantFiltration test this morning after working just fine yesterday).	2009-09-10 14:28:43 +00:00