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gatk-3.8/java/lib/edu/mit/broad/sam
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depristo 17aabb38f9 Basic reorganization of tree 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@8 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-02-28 15:28:56 +00:00
..
apps Basic reorganization of tree 2009-02-28 15:28:56 +00:00
util Basic reorganization of tree 2009-02-28 15:28:56 +00:00
AlignmentBlock.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMFileConstants.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMFileIndex.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMFileReader.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMFileWriter.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMRecord.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BAMRecordCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BinaryCigarCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BinaryTagCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
Cigar.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CigarElement.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CigarOperator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
NotPrimarySkippingIterator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFileHeader.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFileReader.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFileWriter.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFileWriterFactory.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFileWriterImpl.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMFormatException.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMLocusIterator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMProgramRecord.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMReadGroupRecord.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMRecord.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMRecordComparator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMRecordCoordinateComparator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMRecordQueryNameComparator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMRecordSetBuilder.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMSequenceRecord.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMTag.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMTextHeaderCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMTextReader.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMTextWriter.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMTools.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SAMUtils.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
TextCigarCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
TextTagCodec.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00