gatk3的最后一个经典版本3.8

jmaguire 0ea44a5805 1st draft of support for an file containing a list of intervals. ... Appears to work, but inefficient: At each reference location, the entire list of intervals is linear searched. Instead we need to have the intervals sorted, and simply seek forward from interval to interval. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@124 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-21 16:07:32 +00:00
core/java/src/org/broadinstitute/sting	1st draft of support for an file containing a list of intervals.	2009-03-21 16:07:32 +00:00
doc	Describe how GATK finds walkers. Change the example to avoid copying the class file into the walkers directory.	2009-03-19 22:41:12 +00:00
playground	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
settings	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Move the basic gatk framework into the core subtree.	2009-03-18 23:39:00 +00:00
ivy.xml	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00