Roger Zurawicki 0e9c2cefa2 testHardClipSoftClippedBases works with Matches and Deletions ... Insertions are a problem so cigar cases with "I" are commented out. The test works with multiple deletions and matches. This is still not a complete test. A lot of cigar test cases are commented out. Added insertions to ReadClipperUnitTest ReadClipper now tests for all indels. Signed-off-by: Mauricio Carneiro <carneiro@broadinstitute.org>		2011-12-09 11:43:37 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Merged bug fix from Stable into Unstable	2011-12-08 13:11:39 -05:00
test	testHardClipSoftClippedBases works with Matches and Deletions	2011-12-09 11:43:37 -05:00