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gatk3的最后一个经典版本3.8
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Roger Zurawicki 0e9c2cefa2 testHardClipSoftClippedBases works with Matches and Deletions 
Insertions are a problem so cigar cases with "I" are commented out.
The test works with multiple deletions and matches.

This is still not a complete test. A lot of cigar test cases are commented out.

Added insertions to ReadClipperUnitTest

ReadClipper now tests for all indels.

Signed-off-by: Mauricio Carneiro <carneiro@broadinstitute.org>
 		2011-12-09 11:43:37 -05:00
public testHardClipSoftClippedBases works with Matches and Deletions 2011-12-09 11:43:37 -05:00
settings Revved Picard to incorporate tfennell's AsyncSAMFileWriter. 2011-12-06 10:37:42 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml Extensive unit test for GenotypeContextUnitTest 2011-11-20 18:28:01 -05:00
ivy.xml Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3 2011-11-17 14:46:12 -05:00