aaron 246fa28386 RODs for reads phase 2: modified RODRecordList to implement List<ReferenceOrderedDatum> so I could stub it out for testing, added a FlashBackIterator which is needed to prevent the ResourcePool from opening infinity+1 iterators, and some other interfaces to make unit testing much smoother. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2892 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-25 22:48:55 +00:00
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BamToFastqWalker.java	Documentation for more basic walkers.	2009-12-11 18:15:40 +00:00
CreateSequenomMask.java	Completed my documentation responsibilities - based on Mark's reasonable assignment and not the one Matt made up while on Meth.	2009-12-13 04:13:30 +00:00
FastaAlternateReferenceWalker.java	Completed my documentation responsibilities - based on Mark's reasonable assignment and not the one Matt made up while on Meth.	2009-12-13 04:13:30 +00:00
FastaReferenceWalker.java	Documentation for more basic walkers.	2009-12-11 18:15:40 +00:00
FastaSequence.java	Added option to FastaReferenceWalker to change output FASTA file format's line width and to remove header lines; allows dumping raw sequence using intervals	2009-09-15 18:00:30 +00:00
PickSequenomProbes.java	RODs for reads phase 2: modified RODRecordList to implement List<ReferenceOrderedDatum> so I could stub it out for testing, added a FlashBackIterator which is needed to prevent the ResourcePool from opening infinity+1 iterators, and some other interfaces to make unit testing much smoother.	2010-02-25 22:48:55 +00:00